The best pumpkin Kodiak muffins you’ll ever make, packed with tons of amazing flavor and 8 grams of protein per muffin.

It’s no secret I love a good Kodiak Cakes protein muffin. They’re one of my recipe specialties here on the blog.
Protein muffins are quick to throw together, easy to grab on the go for breakfast or a snack and popular with even the pickiest of eaters. And what better way to enjoy a muffin in the fall than with some pumpkin spice goodness?
So this week I’m sharing my latest protein muffin recipe: Protein-Packed Kodiak Pumpkin Muffins!
Jump ahead to:
What Makes These Kodiak Pumpkin Muffins Different

There are a many questionable protein muffin recipes out there.
I felt recipes on the Kodiak boxes (while tasty) were too high in sugar, fat and calories.
On the flip side, the Kodiak protein muffin recipes I found online (and I tried quite a few) were lower in fat and calories but also turned out dry, lacking in flavor and were just a mouthful of disappointment.

Which is why I began experimenting and creating my own Kodiak muffin recipes.
As with all of my Kodiak protein muffin recipes, these pumpkin protein muffins are high-protein, low-fat, full of flavor and vegan adaptable (be sure to see my list of substitutions below the recipe for vegan-friendly ingredient swaps).
They won’t leave your taste buds heartbroken like other “healthy” muffin recipes out there and they’re full of that Great Pumpkin kind of fall spirit.
Part of the key in created a great protein-packed Kodiak muffin recipe is using two things: The right Kodiak mix an the right kind of protein powder. Let’s take a look at where you can find both real quick.
Disclosure: Some of the links below are affiliate links. At no additional cost to you, I will earn a small commission if you click through and make a purchase. I only recommend products I have tried or genuinely believe would be beneficial. Utilizing affiliate links is one of the ways I support my blog to be able to keep delivering you guys great content.
Where to Find Kodiak Cakes Mix

Quite a few retailers now carry Kodiak Cake mixes and products. I’ve regularly found them in Target, Bi-Lo, Walmart and Publix.
But if you’re struggling to find it at your local grocery store (or, like me, just don’t like leaving your house and prefer things to come to you), no worries. Amazon has got’cha back.
Buttermilk Protein Packed Flapjack Mix
Kodiak Cakes Buttermilk Flapjack and Waffle Mix
You can never go wrong with some classic buttermilk flapjack mix. I like that it’s versatile and I can whip up so many different kinds of flavors vs buying a flavored mix and only being able to make one kind. Aim for Kodiak’s protein packed mixed for that extra boost of protein.
Cinnamon Oat Protein Packed Flapjack Mix
Kodiak Cakes Cinnamon Oat Flapjack and Waffle Mix
Want to mix more of the flavors of fall into your Protein-Packed Kodiak Pumpkin Muffins? Then look no further than the Cinnamon Oat Flapjack mix. This is actually one flavor I don’t currently have on hand, but my husband gives it a solid 10/10.
For Gluten-Free Kodiak Muffins
Kodiak Cakes Gluten Free Protein Pancake Flapjack and Waffle Mix
Does gluten not jive well with your system? Not to worry. Kodiak makes a gluten-free mix! That way no one has to miss out on the fun.
Protein Powder Recommendations

A quality protein powder will make or break the difference in your protein muffin. I try to aim for a low-carb, high-protein powder that’s easy on the taste buds and the digestive system.
Here are four protein powder brands that I’ve tried, approved and will work with my muffin recipes.
High-Quality Protein for Baking
Budget-Friendly Protein for Baking
Recipe for Kodiak Pumpkin Muffins

INGREDIENTS:
- 2 Cups Kodiak Cakes protein packed flapjack mix
- 1 Scoop SFH vanilla protein powder (see substitutions listed below)
- 1 Egg (see substitutions below)
- 1 Cup fat-free milk (see substitutions below)
- 1 Cup pumpkin puree
- 1/4 Cup unsweetened applesauce
- 1 Teaspoon vanilla extract
- 2 Teaspoon pumpkin spice
- 1 Teaspoon cinnamon
- 1/2 Cup Splenda brown sugar blend, plus some to sprinkle
Combine all ingredients in a large mixing bowl and stir until smooth. Pour equal amounts of the batter into greased muffin tins and top each muffin with an extra sprinkle brown sugar.
Bake at 350°F for 12-18 minutes (or until they pass the toothpick test). Remove from heat and allow to cool. Makes 12 muffins.
PREP TIPS:
- If you’re counting macros, pay attention to the Kodiak mix you buy (the original mix has 8g of protein per serving while the protein-packed version has 14g).
- If you do meal prep in advance each week, keep in mind with fresh ingredients these muffins stay good for about 3 days. When making a big batch, consider freezing some to use as needed so they don’t start to spoil on you by day 4 or 5.
SUBSTITUTIONS:
- If you’re not a fan of artificial sweeteners like Splenda, you can substitute Stevia or regular sugar.
- You can also substitute soy or coconut milk for the skim milk.
- If you’re vegan, you can swap a vegan baking egg replacer for the chicken egg and use a vegan protein powder. Kodiak does now also make a plant-based classic Kodiak flapjack mix (although it contains slightly less protein than the protein-packed mixes).
- When making substitutions, just keep in mind that your macro count and baking consistency may slightly vary from my specific recipe. If you’re counting macros, just make sure to adjust the recipe macros in a macro calculator based on the ingredients you use.
Nutritional Information and Macronutrients

Nutritional Info and Macros per Muffin:
- Calories: 125
- Carbs: 19 grams
- Fat: 1.6 grams
- Protein: 8.1 grams
- Weight Watchers Points: 4
Final Thoughts on Protein-Packed Pumpkin Kodiak Muffin Recipe

I hope you enjoy this healthy low-calorie pumpkin muffin. It’s packed with protein and doesn’t skimp on flavor. It took a good bit of experimenting and taste-testing, but it was all worth it in the end. I’m so happy to share my recipe with the rest of the muffin-lovers of the world.
If you’re looking for even more delicious, healthy Kodiak Cakes muffin recipes, look no further. It just so happens I’ve got quite a few and you can check them out from the links below.
Related Kodiak Muffin Recipes
- Chocolate Peppermint Kodiak Muffins
- Blueberry Kodiak Muffins
- Apple Spice Kodiak Muffins
- Gingerbread Kodiak Muffins
- Pumpkin-Apple Spice Kodiak Protein Pancakes
All writing and images copyright © 2020 Rachel Elise Weems Woods
Originally published 11-23-17. Updated 10-21-2020.

supermompicks says
These are great for diabetics too since they are loaded with protein. This is one I will have to try!
Reese says
I hadn’t thought about that perspective, but you are probably right! Low sugar doesn’t have to mean low taste or quality!
Nicole Pyles says
Oh yum, I love myself some pumpkin muffins. These look devine!
Reese says
They are soooo good!
Cathy Brotherton says
Hi Reese I was so excited when my muffins came out pretty. But I had a lot of trouble taking the paper of the muffin. I read on how to correct this but I was disappointed that these Pumpkin muffins with lots of spices were bland and not very favorable. What do you suggest to correct this. I love the amount of protein, lack of high carbohydrates they have.
Reese Woods says
Hey, Cathy! So I personally do not use paper cupcake liners when I make muffins (because like you said, they can make a mess and just end up wasting part of the muffin). I just make sure to spray each compartment in my muffin tin with some olive oil cooking spray and then (once the muffins are finished baking) I remove them from the tin while the muffins are still warm (they always come out of the tin quite well for me using this method). As far the the flavor goes, that can somewhat be a matter of personal preference. For example, these pumpkin muffins are lower in sugar than many other muffin recipes, so they may not be quite as sweet as a typical desert muffin. If you’re looking to enhance the overall sweetness, you could experiment with doubling the amount of sugar in the recipe (or simply adding an extra generous sprinkle of sugar on top of them before baking). These muffins are also lower in fat and utilize applesauce instead of butter to retain moisture, but you could totally experiment with swapping in butter in place of the applesauce and see if the end result is more to your liking. The trade off will be that the sugar and fat level in your muffins will be higher, but if you’re okay with that then I say go for it! The protein content will still be much higher than your average muffin. 🙂
Kayvona says
These look so delicious! I really need to make my family some pumpkin muffins!
hal says
I am soooooo not good at baking but for these I would give it a try… I love pumpkin anything!
Reese says
They are so simple to throw together, anyone can perfect these muffins!
Feathers In The Woods (@la_murano) says
These pumpkin protein muffins look amazing and I happen to have everything on hand to make them! Thanks for the recipe.
Reese says
Ooo, you will have to let me know how they turn out!
Christa Anne says
You had me at pumpkin. lol. I love pumpkin in all forms. If I can get some extra protein in, even better!
Reese says
Pumpkin lovers of the world, unite!
Indrani says
I have never tried this pack before. Thanks to your recommendation I am definitely going to try this.I am sure kids will love it.
Reese says
It is definitely kid-friendly baking! And a good way to sneak a healthy treat into their routine!
The Sprouting Minds says
Oh my! I LOVE pumpkin! I seriously pick up a few cans of pumpkin purée as soon as the fall season begins haha! I need to try these muffins!
Reese says
You absolutely do need to try them! Jump on it, girl!
Amanda says
I didn’t realize you had so many Kodiak recipes. These sound amazing for fall and I bet even my kids would love these. Anyway to get more protein! 😉
Reese says
Lol pretty much. And I have several new holiday Kodiak recipes coming out this year too!
Peachy A. says
These Protein Pumpkin Muffins look really delicious. I bet they are perfect with a cup of coffee.
Reese says
They are absolutely perfect with one!
Em Smith says
Those are delicious!! It’s good that it can be freeze!
Reese says
It definitely helps if you want to make a big batch!
Vicky says
I use the Kodiak pancake mix at least a few times every week, for pancakes, and I never would have thought to make muffins with it. This is such a great idea and I can’t wait to use the mix to make muffins. Yum.
Reese says
Oh my goodness, you need some Kodiak muffins in your life!
Ray @ Superpowers Sold Separately says
OMG. I freaking love Kodiak! This is an amazing recipe. I’m always looking for good recipes. Do you mind if I promote this on my blog?
Reese says
Not at all! I’d be happy if you wanted to use it as a guest post with a backlink!
Luci Cook says
These muffins look so delicious. You get all the pumpkin goodness, the spices and full of protein. So it has to be a healthy snack?
Reese says
It is absolutely a healthy snack!
Jackie M. says
Give me all the pumpkin spice! I love that these have protein and the fact that you listed recipe modifications.
Reese says
I know the struggle of having food allergies or sensitivities, so I figured that would just make it easier for more people!
kanishka says
protein packed muffin is something new to me! I would love them as my afternoon snack with tea! All the recipes listed looks mouth-watering, delicious haha
Reese says
They definitely go great with a cup of tea!
paperthoughtss says
I love baking and pumpkin so I’ll definitely try your recipe! After reading your post, I’m definitely craving some now.
xoxo
Sabina
sabiithefirst.com
Reese says
Go make some, girl!
mammabearsays says
these look so delicious. i love that they are protein packed too. super tasty
Reese says
Healthy and tasty is the only way to go!
Maya says
Oooh I love Kodiak cakes and pumpkin, this sounds like a great mix!
Reese says
You gotta try it, girl!
Lurlene Dlouhy says
Hiya, This is a fantastic website, thank you for the detailed recipe for the great blog post.
Darcey Disarufino says
Wow! Thank you! I permanently wanted to write on my blog something like that. Can I include a fragment of your post to my blog?
Reese says
I don’t allow people to copy my writing or recipes on their blogs. I work hard on my recipes and all of my writing and creative content is copyrighted to me. But if you wanted to create a post sharing your experience making my recipe and include a link to my website for people to find the recipe, that would be acceptable. ?
Laurie says
Could you substitute greek yogurt for the milk and if so, how much would you use?
ReeseWoods says
Hey, Laurie! I haven’t tried making it with Greek yogurt, but you can absolutely use things like yogurt and sour cream as milk substitutes! I would use a 1:1 ratio and use an equal amount of Greek yogurt as milk (but use some water to thin out the Greek yogurt since it’s thicker than regular yogurt and account for that in your 1:1 ration)! And let me know how they turn out!
Chiell says
This is perfect for pumpkin szn!! I think my little one would enjoy it.
ReeseWoods says
It’s definitely a kid-friendly recipe!
Heather says
I haven’t tried the Kodiak brand before but I’ve heard a lot of positive reviews from friends. I will have to get some soon!
ReeseWoods says
Most definitely!
Monica Simpson says
I love finding protein packed snacks for the kids. They love muffins too!
ReeseWoods says
These would be perfect!
Tisha says
Love finding new protein packed recipes! Pumpkin is always great as a muffin too YUMMY!
ReeseWoods says
And these are soooo yummy!
Catherine says
I love all things pumpkin so this recipe is up my alley! It’s great to know the nutritional value – this will certainly be on the menu this weekend.
ReeseWoods says
It’s a good one!
Nancy says
What can be used as a substitute for the protein powder?
Reese Woods says
You can choose to make this recipe without the protein powder. I’ve had people tell me they followed the same recipe and just skipped the scoop of protein powder and their muffins turned out just fine (it could impact your cooking time some, so I’d just check on them until they pass the toothpick inspection).
Laurie says
I omitted the protein powder as I didn’t have any but the muffins turned out perfectly. Light, moist and very tasty. Thank you for this recipe. I will definitely make it again.
Reese Woods says
What a great recipe variation! I’m so glad you enjoyed them!